Installation

From PyPI

pip install genevector

From Source

git clone https://github.com/nceglia/genevector.git
cd genevector
pip install -e .

With Numba Acceleration

pip install genevector[fast]

With Rust Backend

Requires the Rust toolchain:

pip install maturin
maturin develop --release

Dependencies

Required:

• Python >= 3.9

• PyTorch

• Scanpy, AnnData

• NumPy, SciPy, Pandas

• Matplotlib, Seaborn

Optional:

Package	Required for	Install
numba	Fast MI computation	pip install numba
squidpy	Building spatial neighbor graphs	pip install squidpy
torch_geometric	PyG-backed aggregations	See PyG docs